Background
I'm passionate about open science, open data, and open source.
I'm currently a programmer in James Fraser's lab at UCSF, working on bioinformatics and structural biology software.
I hold a Ph.D. in Applied Physics from Stanford University, where I performed single-molecule biophysics research with Prof. Steven Block.
I graduated from Caltech in 2013 with a B.S. in Physics, where I conducted high-precision IR spectroscopy research with Prof. Mitchio Okumura.
Publications
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Riley, B.T., Wankowicz, S.A., de Oliveira, S.H.P., van Zundert, G.C.P., Hogan, D.W., Fraser, J.S., Keedy, D.A., van den Bedem, H.
qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps
Protein Sci. 2021;30: 270-285 (2020).
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Milic, B., Andreasson, J.O.L., Hogan, D.W., Block, S.M.
Intraflagellar transport velocity is governed by the number of active KIF17 and KIF3AB motors and their motility properties under load.
Proc. Natl. Acad. Sci. U.S.A. 114: E6830-E6838 (2017).
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Duesterberg, V.K., Fischer-Hwang, I.T., Perez, C.F., Hogan, D.W., Block, S.M.
Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer.
eLife 12362 (2015).
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Bui, T.Q., Long, D.A., Cygan, A., Sironneau, V.T., Hogan, D.W., Rupasinghe, P.M., Ciuryło, R., Lisak, D., and Okumura, M.
Observations of Dicke narrowing and speed dependence in air-broadened CO2 lineshapes near 2.06 µm.
J. Chem. Phys. 141: 174301 (2014).
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CV
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